Can we still specifically find unassigned annotations?

Working with the i-phone and marking annotations has its challenges. One of them is that it is very easy to mistakenly delete notebooks.

Is it still possible to isolate out the unassigned annotations on churchofjesuschrist.org? I lost two notebooks and would like to recover my assignment of scriptures to them. Any other suggestions?

No, there isn't currently a way to see only the annotations that aren't assigned to a notebook. There are a lot of improvements that could be made for filtering and sorting in the All Notes/Annotations section. You could send it in as a feature request using the Feedback link at the bottom of the website!